A lot of commands used `c.Meta.flagSet()` to create the initial flagset for the command, while quite a few of them didn’t actually use or support the flags that are then added.
So I updated a few commands to use `flag.NewFlagSet()` instead to only add the flags that are actually needed/supported.
Additionally this prevents a few commands from using locking while they actually don’t need locking (as locking is enabled as a default in `c.Meta.flagSet()`.
Update the command package to use the new module storage. Move the old
command output strings into the module storage itself. This could be
moved back later either by using ui callbacks, or designing a module
storage interface once we know what the final requirements will look
like.
Sander van Harmelen